清華大學分子動力學(參考版)
2024-12-11 10:46本頁面
【正文】 (B) open (the heavy fluid is coloured in light grey while the lighter one is dark grey, the black part of the figure is empty, ., it does not contain particles). Fig. 2. The effect of converging geometry obtained by MD simulation of one million particles in the microscale. μm CASE (4)Typical translocation event 1. A bias applied to membrane. 2. 20 basepair fragment of double stranded DNA placed in front of a nanopore. 3. End of DNA nearest to the pore is pulled into the pore by its charged backbone (a,b) 4. System reaches a metastable state (c) and translocation halts. 5. Basepairs start to split. Some freed nucleotides adhere to pore surface. 6. Voltage increased momentarily to drive system out of metastable state. 7. DNA exits pore. One of the bases holds firmly to the pore surface. 8. After 50ns, most of DNA has left pore. Nine of twenty base pairs are split. Bubble nucleation on solid surfaces Maruyama, S, and Kimura, T., 2022, A Molecular Dynamics Simulation of a Bubble Nucleation on Solid Surface, Heat and Technology, Vol. 18, pp. 6973. Molecular transport in droplets Maruyama, S., Matsumoto, S., and Ogita, A., 1994, Surface Phenomena of Molecular Clusters by Molecular Dynamics Method, Thermal Science and Engineering, Vol. 2, No. 1. Full View Sliced View Void View 參考書目 ? D. C. Rapaport. The Art of Molecular Dyna mics Simulation. LAMMPS ? 開源的 MD模擬軟件 ? 版本 ? Fortran77＋ MPI
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